Get a virtual cloud desktop with the Linux distro that you want in less than five minutes with Shells! It said "No listener" was expected, but I didn't remember I had seen the error "No such file or directory" before. i checked and found the reason is swag will redirect onlyoffice to a new web address without port , so the "proxy_redirect" is necessary. -reference ref.fasta: here you must provide a file containing the reference genome in fasta format By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. fatal error: Eigen/Dense: No such file or directory. File "elector.py", line 168, in With over 10 pre-installed distros to choose from, the worry-free installation life is here! Find centralized, trusted content and collaborate around the technologies you use most. We could add all swagger doc to this file, but this isn't a very good solution. sh. Employer made me redundant, then retracted the notice after realising that I'm about to start on a new project. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Create directory foo with the mkdir command. About Us. I have removed the container and tested that the result then becomes 0 which is also correct. Does the 0m elevation height of a Digital Elevation Model (Copernicus DEM) correspond to mean sea level? Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. There are two types of paths in Python. Press "Ctrl + V". Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. is not the same as. You either want to remove the initial slash or you can use an environment variable prefix like SRC_DIR = $(MY_PROJECT_BASE_DIRECTORY)/src. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. What value for LANG should I use for "sort -u correctly handle Chinese characters? Cannot open include file: 'unistd.h': No such file or directory. Making location easier for developers with new data primitives, Stop requiring only one assertion per unit test: Multiple assertions are fine, Mobile app infrastructure being decommissioned, 2022 Moderator Election Q&A Question Collection. File "/home/urbe/Tools/ELECTOR/computeStats.py", line 155, in outputRecallPrecision conditional directives arent part of a recipe, so they mustnt start with a tab; conditional directives are evaluated as the Makefile is read, so variables must be assigned previously and cant be target-specific; phony targets should be declared as such. Change directory in the terminal to where the Python script is actually located. Making statements based on opinion; back them up with references or personal experience. How to distinguish it-cleft and extraposition? I have removed the '/' character. I am trying to compile a C++ program using make. If you wish to directly provide a genome to ELECTOR, and let it do the job of finding the perfect / reference reads itself, you should use the "-reference" option instead. 2.Change the location of audit_trail initialization parameter to a valid location in the OS. To learn more, see our tips on writing great answers. Additional comment: I suspect some missing dependencies: usually, a .c or cpp source file doesn't only depend on the corresponding header file, but might also include other headers from the project. I am using Ubuntu 20.04, cmake version 3.16.3, Qt version 5.12.8, Qt5 Qt5Core Qt5Gui Qt5OpenGL Qt5PrintSupport Qt5Test Qt5Xml Can the STM32F1 used for ST-LINK on the ST discovery boards be used as a normal chip? What value for LANG should I use for "sort -u correctly handle Chinese characters? Make a wide rectangle out of T-Pipes without loops. -simulator name: here you must provide the name of the simulator that was used to simulate the read (we currently only support SimLoRD and NanoSim) #BITWARDEN # make sure that your domain has dns has a cname or a record set for the subdomain bitwarden # This config file will work as is when using a custom docker network the same as letesencrypt (proxynet). To subscribe to this RSS feed, copy and paste this URL into your RSS reader. How to distinguish it-cleft and extraposition? This will paste the error between the code tags. I was mostly wondering if it would make a difference - but otherwise if space isn't going to be tight, I don't think it's better. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. The window return can be removed by simply executing the command: sed -i -e 's/r$//' filename. rev2022.11.3.43003. I have the following structure in my project: The reason for the error is because engine-lib is never built, and its CMake file is never even processed. Are Githyanki under Nondetection all the time? The best answers are voted up and rise to the top, Not the answer you're looking for? The first number is usually the more helpful of the two because you can use it to locate the error in your sketch. What value for LANG should I use for "sort -u correctly handle Chinese characters? Whether you are a digital nomad or just looking for flexibility, Shells can put your Linux machine on the device that you want to use. I have coded the below but am getting the error shown below. Not the answer you're looking for? Does the 0m elevation height of a Digital Elevation Model (Copernicus DEM) correspond to mean sea level? Can someone please advise me what I am doing wrong? How to find specific/local files via CMake, There is an error "cannot create .moc/main.moc ", when I compile the mysql driver for Qt5.7, How to include libraries in OSX bundles with CMAKE, fail to use Q_OBJECT Macro in CMake Project, Cmake: make static library and use in other projects, Clang with cmake. msa = open(fileName, 'r') 'It was Ben that found it' v 'It was clear that Ben found it'. I don't think anyone finds what I'm working on interesting. The first step is to install the dos2unix tool using this command: $ sudo apt install dos2unix Once the tool is installed, convert the DOS file into an Ubuntu-compatible file using the following command: $ dos2unix sample.dos The system should be able to run the script file without the error being prompted after the conversion is complete. I don't think anyone finds what I'm working on interesting. The offending line in your CMake file is this one: add_subdirectory ( db engine ) When using add_subdirectory in this manner, the second argument becomes the binary directory for the generated content related to db. I am trying to create a Makefile target which first checks to see if my Docker container exists. The os.listdir () is a built-in Python method that lists the files in the current working directory. You may then run the python3 command as above. Absolute Path Relative Path That made me wonder what lsnrctl command was looking for. Your commands contain both shell variables like. Please do not include answers related to QtCreator, or Qt installation errors. but it seems busy doing something for last 12 hour which I think is not normal ! with exit code 2]. Have a question about this project? I have checked my Qt installation folder, and I have Qt5Core and Qt5Sql on the same directory level installed. When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. Thanks for contributing an answer to Stack Overflow! Then we get to the smoking gun of the error. Why are only 2 out of the 3 boosters on Falcon Heavy reused? Press Install and make sure you install the library, including all of its dependencies (other libraries that this library uses). How we fix rsync no such file or directory error Here are the steps that our Support Engineers provide to our customers to get rid of this rsync error. How many characters/pages could WordStar hold on a typical CP/M machine? Hi @morispi This mostly occurs when copying and pasting an unknown source file into the operating system. Package gstreamer-video-1. To learn more, see our tips on writing great answers. Is a planet-sized magnet a good interstellar weapon? Would it be illegal for me to act as a Civillian Traffic Enforcer? Should we burninate the [variations] tag? FileNotFoundError: [Errno 2] No such file or directory: '/home/urbe/Tools/ELECTOR/msa_canu.fa'. Why does it matter that a group of January 6 rioters went to Olive Garden for dinner after the riot? sudo chown root /home/lisa. Mean that a large amount of nuc has been handled: 100000000. 2. Not the answer you're looking for? The first of the three runs fine but when I try to execute the second one (./make) I get the following error: bash: ./make: No such file or directory. nbReads, throughput, precision, recall, correctBaseRate, errorRate, smallReads, wronglyCorReads, percentGCRef, percentGCCorr, numberSplit, meanMissing, numberExtended, meanExtension, minLength, indelsubsUncorr, indelsubsCorr , homoInsU, homoDeleU, homoInsC, homoDeleC, homoInsUMean, homoDeleUMean, homoInsCMean, homoDeleCMean = computeStats.outputRecallPrecision(sortedCorrectedFileName, outputDirPath, logFile, smallReads, wronglyCorReads, reportedHomopolThreshold, size_corrected_read_threshold, 0, 0, soft) When using the "-perfect" option, ELECTOR is assuming the input file represents "perfect / reference" reads, that are, reads without sequencing errors. What am I doing wrong including Qt5Sql? Horror story: only people who smoke could see some monsters. How can I best opt out of this? thanks a lot. touch foo/bar.txt How are different terrains, defined by their angle, called in climbing? Hello everyone When I run the sample script: python scripts/txt2img.py --prompt "a photograph of an astronaut riding a horse" --plms I get the following: Loading model from models/ldm/sta. Finding features that intersect QgsRectangle but are not equal to themselves using PyQGIS. thank you for this this is very helpful - also your explanation as I was struggling to follow the GNU documentation. There are a few possible causes for the "No such file or directory" error: 1. Go to Sketch > Include Library > Manage Libraries Type in the name "ArduinoIoTCloud", select it in the list and press Install. -reference ref.fasta: here you must provide a file containing the reference genome in fasta format Making statements based on opinion; back them up with references or personal experience. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Cypress has got a script to clear the registry, so create a Support Case (at top of this page click on "Design Support" and select "Create a Support Case" Bob View solution in original post 0 Likes Reply All forum topics Previous Topic Next Topic 7 Replies Bob_Marlowe Level 10 Nov 07, 2015 04:07 PM To check all the files in the directory, use the os.listdir () method. Why can we add/substract/cross out chemical equations for Hess law? If so, this is most probably why you are getting this error. You signed in with another tab or window. Open Arduino IDE Click the Sketch Menu -> Include Library -> Manage Libraries Search BusIO Then Install wait until it's finished. One typo in the previous version was that I have .c when I am using .cpp and c++. Is that command right ? How did Mendel know if a plant was a homozygous tall (TT), or a heterozygous tall (Tt)? The following works: result = $ (shell docker ps -f name=myapp -q | wc -l) start_docker_myapp: ifeq ($ (strip $ (result)),1) @echo true else @echo false endif .PHONY: start_docker_myapp Share Improve this answer answered May 28, 2019 at 15:01 Stephen Kitt 375k 49 961 1056 Already on GitHub? I was going try to do this in my Jenkinsfile but I read a comment that that wasnt the place for it either - so thought I would delegate this to a Makefile. This tutorial explains how to fix Can't exec make - No such file or directory at /usr/share/perl/5.14/CPAN/Distribution.pm in Ubuntu & CentOS To subscribe to this RSS feed, copy and paste this URL into your RSS reader. In order to build the project without Qt5Sql I just have to remove the db folder, and delete lines referring to that in my other CMakeLists.txt files. I am using Jenkins. The "19" is telling you the length of the line of code in spaces and characters. [oracle@joetest dbinstall]$ strace -o /tmp/output.txt lsnrctl status mkdir foo Create file bar.txt inside the foo directory. Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. I tried with -reference on example data Update the post and add the new makefile (with the slash fix and the. nbReads, throughput, precision, recall, corBasesRate, errorRate, extendedBases, missingSize, GCRateRef, GCRateCorr, indelsubsUncorr, indelsubsCorr, numberHomopolymersInserInCorrected, numberHomopolymersDeleInCorrected , numberHomopolymersInserInUncorrected , numberHomopolymersDeleInUncorrected, meanLengthDeleHomopolymersInUncorrected , meanLengthInserHomopolymersInUncorrected , meanLengthInserHomopolymersInCorrected , meanLengthDeleHomopolymersInCorrected = computeMetrics(outDir + "/msa_" + soft + ".fa", outMetrics, correctedFileName, reportedHomopolThreshold ) It only takes a minute to sign up. They must be the original reads for which the correction has been provided to the -corrected switch. Why can templates only be implemented in the header file? How can I find a lens locking screw if I have lost the original one? Then use something like declare -p fdir isufx ictx to see what the variables really contain. rev2022.11.3.43003. 1.Create the approprite directory/location specified by audit_trail initialization parameter from operating system and grant appropriate permission to that directory. Ionic 2 - how to make ion-button with icon and text on two lines? Or did I missed something ? thank you for this. Which means: "for every file matching the pattern "%.o" in $(BIN_DIR), compile it using the associated $(SRC_DIR)/%.cpp as argument (first dependency) Additional comment: I suspect some missing dependencies: usually, a .c or cpp source file doesn't only depend on the corresponding header file, but might also include other headers from the project. I'm not sure why this question was down-voted. Thanks for contributing an answer to Unix & Linux Stack Exchange! How can I get a huge Saturn-like ringed moon in the sky? Have a question about this project? -corrected LR.fasta: here you must provide a file of corrected long reads in fasta format Would it be illegal for me to act as a Civillian Traffic Enforcer? What is the difference between the GNU Makefile variable assignments =, ?=, := and +=? What should I do? Use the keyboard combination Ctrl + X to exit nano. Why can templates only be implemented in the header file? 3. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. Reason for use of accusative in this phrase? Should we burninate the [variations] tag? They must be the original reads for which the correction has been provided to the -corrected switch. In the Add New Item dialog box, click the Visual C++ folder then choose Resource File (.rc) in the right pane. Well occasionally send you account related emails. (I have temporarily commented out the docker commands and replaced them with echo true / false just while I am debugging). I don't think anyone finds what I'm working on interesting. There may be many shortcomings, please advise. 'It was Ben that found it' v 'It was clear that Ben found it', An inf-sup estimate for holomorphic functions, Saving for retirement starting at 68 years old. There are a number of issues with your Makefile (beyond the question of whether a Makefile is the appropriate solution): To set a variable value inside a target, you must use the eval syntax: Alternatively, you can evaluate this variable outside a rule: Instead of implementing a mix of shell script code and make variables I suggest to implement this as a pure shell script integrated in the Makefile. target_include_directories "No such file or directory". ++ /bin/wavfiletool.exe -g -O2 g++: error: /bin/wavfiletool.exe: No such file or directory g++: fatal error: no input files compilation Non-anthropic, universal units of time for active SETI. Asking for help, clarification, or responding to other answers. So I used the command strace to check what files were being opened. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. How to create psychedelic experiences for healthy people without drugs? Can a character use 'Paragon Surge' to gain a feat they temporarily qualify for? Making statements based on opinion; back them up with references or personal experience. Please include a copy of those files ( without all the boilerplate comments) in your question. ./make. Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site, Learn more about Stack Overflow the company, Why do you want to implement this in a Makefile? How to help a successful high schooler who is failing in college? Why do missiles typically have cylindrical fuselage and not a fuselage that generates more lift? To subscribe to this RSS feed, copy and paste this URL into your RSS reader. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. thank you for the explanation and example this is also very helpful. "Public domain": Can I sell prints of the James Webb Space Telescope? Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. I have edited the makefile. 1. Qt5Concurrent Qt5DBus Qt5Network Qt5OpenGLExtensions Qt5Sql Qt5Widgets. Have a question about this project? How can i extract files in the directory where they're located with the find command? The file or directory you're trying to access is located in a different directory than the one you're currently in. Some leftovers from a de-installation probably. Mean that a large amount of nuc has been handled: 100000000 -rm: cannot remove '/home/urbe/Tools/ELECTOR/swag*': No such file or directory Traceback (most recent call last): File "elector.py", line 168, in main() File "elector.py", line 136, in main Is there a trick for softening butter quickly? Get a virtual cloud desktop with the Linux distro that you want in less than five minutes with Shells! How can I find a lens locking screw if I have lost the original one? When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Update the post and add the new makefile (with the slash fix and the -o fix) and show us the new error output. Indeed, the reads from the -corrected and from the -uncorrected switches have to have matching headers. Got to certbot's website, selected ubuntu and nginx, and followed the steps ive posted below. File "/home/urbe/Tools/ELECTOR/computeStats.py", line 444, in computeMetrics make: *** [/bin/wavfiletool.exe] Error 1 [Finished in 0.1s Please remember to mark my reply by clicking "Did this solve your problem?". It's a great, well-documented question, and indicates the issue was already researched. From home to enter brian2 from /home/, type in terminal cd ./brian2 or simply, cd brian2 When to say cd /brian2, it tries to navigate the folder at / but there is no folder brian2 Further Clarification as you asked in your comment Christian Mann aptly said it, tilde ~ refers the same thing as /home/brian2 in your case. Asking for help, clarification, or responding to other answers. Perhaps you should add the directory containing `gstreamer-video-1..pc'. to the PKG_CONFIG_PATH environment variable. To learn more, see our tips on writing great answers. To fix this, you must call add_subdirectory consecutive times for including multiple sub-directories. As a result, you may notice that CMake placed some build artifacts in your src/engine directory, which is probably not what you want. Or create a new MfC application using the wizard like RLWA32 suggested, it will generate a resource.h file. You then have a few possible alternatives. As a result, you may notice that CMake placed some build artifacts in your src/engine directory, which is probably not what you want. The offending line in your CMake file is this one: When using add_subdirectory in this manner, the second argument becomes the binary directory for the generated content related to db. This will add the forum's code tags markup to your reply. Browse other questions tagged. When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. yes , Comment out the "proxy_redirect" line can fix the swag problem , but the onlyoffice will not functionable in nextcloud any more . I run the command cmake .. && make from the directory build and I receive the following error: I have searched this topic briefly, however when I ran this project without Qt5Sql, using only Qt5Core I have no problem at all building the project. # However the container name is expected to be "bitwardenrs" as it is by default the template as this name is used to resolve. I will try your script. Does activating the pump in a vacuum chamber produce movement of the air inside? When I try running the following makefile, I get the subsequent error. Asking for help, clarification, or responding to other answers. How do I simplify/combine these two methods? The permissions on the file or directory you're trying to access are set incorrectly. Please include the entire output from running make including the invocation of make itself and the g++ command that fails. Makefile to put object files from source files different directories into a single, separate directory? website: http://www.gregjonesdev.com Command line: $ sudo apt-get install software-properties-common $ sudo add-apt-repository ppa:certbot/certbot $ sudo apt-get update $ sudo apt-get install python-certbot-nginx $ certbot --nginx (from Certbox's Guide) Stack Exchange network consists of 182 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. -corrector name: here you must provide the name of the correction method that was used to correct the reads (see list of supported correctors in the README), -corrected LR.fasta: here you must provide a file of corrected long reads in fasta format So this thing, "Servo.h." It reads source files from src directory, puts objects in the build directory, and puts the exe in the bin directory. After doing a rpi-update, I updated my RaspberryPi, to the 5.10.81+ kernel, but I find that the build directory does not exist in this kernel, but it does exist in the 5.10.63+ kernel.. To fix this, I had to do a downgrade with: sudo apt install --reinstall raspberrypi-bootloader raspberrypi-kernel With over 10 pre-installed distros to choose from, the worry-free installation life is here! i am trying to fix this .. What is the difference between the GNU Makefile variable assignments =, ?=, := and +=? Irene is an engineered-person, so why does she have a heart problem? The text was updated successfully, but these errors were encountered: I can see you used "-perfect /media/urbe/ARCgenomic/toyGenome/toy.fasta". Finding features that intersect QgsRectangle but are not equal to themselves using PyQGIS, Fourier transform of a functional derivative. It is caused by the presence of the Window return character (^M) that is ending the line. What is the purpose of .PHONY in a Makefile? this behavior happen if the target directory doesn't . Stack Overflow for Teams is moving to its own domain! What's a good single chain ring size for a 7s 12-28 cassette for better hill climbing? SDL/SDL_image.h: No such file or directory. Without seeing at least your CMakeLists.txt and package.xml this is going to be difficult to diagnose. rev2022.11.3.43003. Another caution: please keep /home where it is intended for: to create a home for users and don't store files in /home itself; user their home to store files for that . I know that the cronjob to invoke the my_shell_script.sh gets created as running "crontab -l" plus receiving emails proves. Python.h: No such file or directory. Thanks for reply. ./make install. What exactly makes a black hole STAY a black hole? The file or directory you're trying to access doesn't exist. It seems like what you provided you the -uncorrected switch (Sim) is an unexisting file, hence the program never stopping. 30 * * * * sh ./my_shell_script. . Best way to get consistent results when baking a purposely underbaked mud cake. Use the edit button/link for that, and the Preformatted text button to format them. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Adding a "test.go" file to project root makes Swag output the following error instead: Adding a "main.go" file to project root makes it work just fine. Fatal error: iostream: No such file or directory in compiling C program using GCC. rev2022.11.3.43003. Unless all of your directories (i.e., BIN_DIR, SRC_DIR) are in the root directory (/) then that is why you're getting the error. jni.h: No such file or directory. If the text exceeds the forum's 9000 character limit, save it to a .txt file and post it as an attachment. to your account, I tried this as well, but ended with following error, ELECTOR git:(master) python3 elector.py -perfect /media/urbe/ARCgenomic/toyGenome/toy.fasta -uncorrected /media/urbe/ARCgenomic/toyGenome/toyLongReads.fasta -corrected /home/urbe/Tools/canu/Linux-amd64/bin/simTest20x/simTest20x.correctedReads.fasta -threads 40 -split -corrector canu, Traceback (most recent call last): Is your "toy.fasta" file an actual genome? An easier way is to add the library in the Library Manager. Found footage movie where teens get superpowers after getting struck by lightning? After reading quite a few tutorials, I have come upon the following make file. Use set -x to see the command that goes to grep, there's an empty filename there. the purpose of answering questions, errors, examples in the programming process. I prefer women who cook good food, who speak three languages, and who go mountain hiking - what if it is a woman who only has one of the attributes? Connect and share knowledge within a single location that is structured and easy to search. Not the answer you're looking for? . Senior Oracle DBA UNIX is a registered trademark of The Open Group. I will take a look at this as well. swag help init NAME: swag init - Create docs.go USAGE: swag init [command options] [arguments.] If the desktop directory is ~/Desktop, then cd ~/Desktop will take you there. @Bodo yes I define the Make variables at the top of the script and yes I take one of the shell variables and do some manipulation on it to create the Make variables..this works ok. Connect and share knowledge within a single location that is structured and easy to search. Short story about skydiving while on a time dilation drug. If you don't manage to run ELECTOR on the datasets you want, just describe me what you want to do, and I'll help providing you the command line. Did Dick Cheney run a death squad that killed Benazir Bhutto? To fix the fatal error: Adafruit_I2CDevice.h: No such file or directory just add the BusIO library. Use sudo. The correct line for compiling should look like this: Which means: "for every file matching the pattern "%.o" in $(BIN_DIR), compile it using the associated $(SRC_DIR)/%.cpp as argument (first dependency). You will at some point do something that is irreversible. The main purpose of. Edit: The structure we're using follows these guidelines: https://github.com/golang-standards/project-layout Member gvdhoorn ( Jun 20 '16 ) 3 To learn more, see our tips on writing great answers. My question is: Why does it work if I want to include only Qt5Core, and why does it not work when I also include Qt5Sql? Some coworkers are committing to work overtime for a 1% bonus. Fourier transform of a functional derivative. How do I simplify/combine these two methods? python3 elector.py -reference example/example_reference.fasta -corrected example/corrected_reads.fasta -uncorrected Sim -threads 46 -simulator simlord -output test2. Stack Overflow for Teams is moving to its own domain! -uncorrected rawReads.fasta: here you must provide a file of uncorrected long reads in fasta format. We will use the touch command to create this file. To execute them externally you must use this syntax: cmd /c start . Why is this? Why does it matter that a group of January 6 rioters went to Olive Garden for dinner after the riot? Makefile that changes directory then compiles code, Include header file in different directory in c++, attempting to get main.cpp output using the makefile command make. privacy statement. Also I would be grateful for any suggestions you might have for a good documentation / tutorial.
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